Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs9642207 chr7:61097087 T/C 1.17E-6 369 10.27 20.27 24.15 KM Plot
CRC rs9647733 chr7:61988750 G/A 6.37E-7 366 22.75 20.3 11.27 KM Plot
CRC rs9690452 chr7:61070212 A/C 1.14E-6 370 23.83 20.27 10.27 KM Plot
CRC rs9690794 chr7:61075323 G/C 1.17E-6 369 24.15 20.27 10.27 KM Plot
CRC rs9690927 chr7:61075353 G/A 1.17E-6 369 24.15 20.27 10.27 KM Plot
CRC rs9718674 chr7:61067423 G/A 3.54E-8 362 24.15 20.38 9.72 KM Plot
CRC rs9769715 chr7:61085551 A/C 1.17E-6 369 10.27 20.27 24.15 KM Plot
CRC rs9770170 chr7:61083898 T/C 1.17E-6 369 10.27 20.27 24.15 KM Plot
CRC rs9770684 chr7:61084240 A/T 1.36E-6 367 10.27 20.3 23.83 KM Plot
CRC rs9771253 chr7:61061649 C/T 1.14E-6 370 23.83 20.27 10.27 KM Plot
CRC rs9885400 chr5:54646894 A/G 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs9904193 chr17:26333714 A/G 2.1E-5 367 21.43 25.53 16.47 KM Plot
CRC rs9942655 chr7:61079536 G/A 1.17E-6 369 24.15 20.27 10.27 KM Plot
ESCA rs10015062 chr4:114332302 C/T 1.11E-5 184 13.33 15.07 4.35 KM Plot
ESCA rs10030570 chr4:10027160 G/T 3.12E-5 181 13.22 13.6 8.02 KM Plot